Group action: Difference between revisions

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If you read the rest of the paragraph, it is clear that "symmetry group" is what is intended. Moreover, if the action is not transitive, then it is not the symmetric group, which consists of all permutations
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'''GTPases''' (singular GTPase) are a large family of [[hydrolase]] [[enzyme]]s that can bind and [[hydrolysis|hydrolyze]] [[Guanosine triphosphate|guanosine triphosphate (GTP)]].<ref name="pmid16314935">{{cite journal | author = Scheffzek K, Ahmadian MR | title = GTPase activating proteins: structural and functional insights 18 years after discovery | journal = Cellular and Molecular Life Sciences : CMLS | volume = 62 | issue = 24 | pages = 3014–38 |date=December 2005 | pmid = 16314935 | doi = 10.1007/s00018-005-5136-x }}</ref> The GTP binding and hydrolysis takes place in the highly [[Conserved sequence|conserved]] ''G [[domain (protein)|domain]]'' common to all '''GTPases'''.
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==Functions==
GTPases play an important role in:
* [[Signal transduction]] at the intracellular domain of [[G protein-coupled receptor|transmembrane receptor]]s, including recognition of taste, smell and light.  
* [[Protein biosynthesis]] (aka [[translation (biology)|translation]]) at the [[ribosome]].
* Control and [[cellular differentiation|differentiation]] during [[cell division]].
* [[Protein targeting#Protein translocation|Translocation]] of [[protein]]s through [[cell membrane|membrane]]s.  
* Transport of [[vesicle (biology)|vesicle]]s within the [[cell (biology)|cell]]. (GTPases control assembly of vesicle coats).
 
== Mechanism ==
The hydrolysis of the γ [[phosphate]] of GTP into [[guanosine diphosphate]] (GDP) and P<sub>i</sub>, [[inorganic phosphate]], occurs by the S<sub>N</sub>2 mechanism (see [[nucleophilic substitution]]) via a ''pentavalent intermediate state'' and is dependent on the [[magnesium]] [[ion]] Mg<sup>2+</sup>.
 
==Major motifs==
In most GTPases, the specificity for the base [[guanine]] is imparted by the base-recognition motif, which has the consensus sequence [N/T]KXD. <ref>{{cite journal |author=Leipe D.D., Wolf Y.I., Koonin E.V., and Aravind, L. |title=Classification and evolution of P-loop GTPases and related ATPases |journal=J. Mol. Biol. |volume=317 |issue=1 |pages=41–72 |year=2002 |doi=10.1006/jmbi.2001.5378 |pmid=11916378}}</ref>
 
==Regulatory GTPases==
Regulatory GTPases, also called the [[GTPase superfamily]], are GTPases used for regulation of other [[biochemistry|biochemical]] processes. Most prominent among the regulatory GTPases are the G proteins.
 
===GTP switch===
All regulatory GTPases have a common mechanism that enables them to switch a [[signal transduction]] chain on and off. Toggling the switch is performed by the unidirectional change of the GTPase from the ''active, [[Guanosine triphosphate|GTP]]-bound form'' to the ''inactive, [[guanosine diphosphate|GDP]]-bound form'' by [[hydrolysis]] of the GTP through intrinsic GTPase-activity, effectively switching the GTPase ''off''. This reaction is initiated by [[GTPase-activating protein]]s (GAPs), coming from another signal transduction pathway. It can be reversed (switching the GTPase ''on'' again) by [[Guanine nucleotide exchange factor]]s (GEFs), which cause the GDP to dissociate from the GTPase, leading to its association with a new GTP. This closes the cycle to the active state of the GTPase; the irreversible hydrolysis of the GTP to GDP forces the cycle to run only in one direction. Only the active state of the GTPase can transduce a signal to a reaction chain.
 
===Switch regulation===
The efficiency of the signal transduction via a GTPase depends on the ratio of active to inactive GTPase. That
 
equals:
 
<!--
:GTPase*GTP  k<sub>diss.GDP</sub>
:<sup>__________</sup> = <sup>_________</sup>
:GTPase*GDP  k<sub>cat.GTP</sub>
-->
 
:<math>
\frac {\mbox{GTPase}*\mbox{GTP}} {\mbox{GTPase}*\mbox{GDP}} =
\frac {k_\mbox{diss.GDP}} {k_\mbox{cat.GTP}}
</math>
 
with ''k<sub>diss.GDP</sub>'' being the dissociation constant of GDP, and ''k<sub>cat.GTP</sub>'' the hydrolysis constant of GTP for the specific GTPase. Both constants can be modified by special regulatory proteins.<br>  
 
The amount of active GTPase can be changed in several ways :
# Acceleration of GDP dissociation by GEFs speeds up the building of active GTPase.  
# Inhibition of GDP dissociation by [[Guanine nucleotide dissociation inhibitors]] (GDIs) slows down the building of active GTPase.  
# Acceleration of GTP hydrolysis by GAPs reduces the amount of active GTPase.  
# ''GTP analogues'' like ''&gamma;-S-GTP'', ''&beta;,&gamma;-methylene-GTP'', and ''&beta;,&gamma;-imino-GTP'' that cannot be hydrolyzed fixate the GTPase in its active state.
 
==Heterotrimeric G proteins==
These G proteins are made from three subunits, with the G domain located on the largest one (the ''&alpha; unit''); together with the two smaller subunits (''&beta;'' and ''&gamma; units''), they form a tightly associated protein complex. α and γ unit are associated with the membrane by [[lipid anchor]]s. Heterotrimeric G proteins act as the specific reaction partners of [[G protein-coupled receptor]]s. The GTPase is normally inactive. Upon receptor activation, the intracellular receptor domain activates the GTPase, which in turn activates other molecules of the signal transduction chain, either via the α unit or the βγ complex. Among the target molecules of the active GTPase are [[adenylate cyclase]] and [[ion channel]]s. The heterotrimeric G proteins can be classified by [[sequence homology]] of the α unit into four families:
# ''G<sub>s</sub> family.'' These G proteins are used in the signal transduction of taste and smell. They always use the activation of [[adenylate cyclase]] as the next step in the signal chain. The <sub>s</sub> stands for stimulation. Their function is permanently activated by the [[cholera toxin]], which is the cause of the fatal effects of infection with ''[[Vibrio cholerae]]''.
# ''G<sub>i</sub> family.'' The ''i'' stands for ''inhibition'' of the [[adenylate cyclase]]; another effector molecule for this protein family is ''[[phospholipase]] C''. Also, G<sub>t</sub> and G<sub>g</sub> proteins are summarized under this label due to sequence homologies. G<sub>t</sub> proteins, aka [[transducin]], is used in the light recognition pathway in retina cells. G<sub>g</sub> protein occurs in the taste recognition for ''bitter''. Most G<sub>i</sub> protein family members can be inhibited by the [[pertussis toxin]] of ''[[Bordetella pertussis]]''.
# ''G<sub>q</sub> family.'' These proteins usually have [[phospholipase]] C as effector protein.
# ''G<sub>12</sub> family.'' These G proteins can be activated by [[thromboxan receptor]]s and [[thrombin receptor]]s. Their effector proteins are unknown.
By combination of different α, β and γ subunits, a great variety (>1000) G proteins can be produced.
GDP is not needed for GTP.
 
===Activation cycle of heterotrimeric G proteins===
In the basic state, the G<sub>α</sub>-GDP-G<sub>βγ</sub> complex and the receptor that can activate it are separately associated with the membrane. On receptor activation, the receptor becomes highly [[electron affinity|affine]] for the G protein - GDP complex. On binding with the complex, GDP dissociates from the complex; the receptor works as a GEF - GDP-GTP Exchange Factor; the ''free'' complex has a high affinity for GTP. Upon GTP binding, both G<sub>α</sub>-GTP and G<sub>βγ</sub> separate from both the receptor and from each other. Depending on the lifetime of the active state of the receptor, it can activate more G proteins this way.<br>  
 
Both G<sub>α</sub>-GTP and G<sub>βγ</sub> can now activate separate and/or the same effector molecules, thus sending the signal further down the signal reaction chain. Once the intrinsic GTPase activity of the α unit has hydrolyzed the GTP to GDP, and then the two parts associate to the original, inactive state. The speed of the hydrolysis reaction works as an internal clock for the length of the signal.
 
==The Ras GTPase superfamily==
These are small monomeric proteins homologous to [[Ras (protein)|Ras]].  They are also called [[small GTPase]]s.  Small GTPases have a molecular weight of about 21 kilodaltons and generally serve as molecular switches for a variety of cellular signaling events. According to their primary amino acid sequences and biochemical properties, the Ras superfamily is further divided into five subfamilies: [[Ras (protein)|Ras]], [[Rho family of GTPases|Rho]], [[Rab (G-protein)|Rab]], [[ADP ribosylation factor|Arf]] and [[Ran protein|Ran]]. The [[Rho family of GTPases|Rho]] subfamily is further divided into RHOA, RAC1, and CDC42.<ref>{{cite journal |author=Hippenstiel S, Schmeck B, N'Guessan PD, ''et al.'' |title=Rho protein inactivation induced apoptosis of cultured human endothelial cells |journal=Am. J. Physiol. Lung Cell Mol. Physiol. |volume=283 |issue=4 |pages=L830–8 |date=October 2002 |pmid=12225960 |doi=10.1152/ajplung.00467.2001 |url=http://ajplung.physiology.org/cgi/pmidlookup?view=long&pmid=12225960}}</ref>
 
==[[Translation (biology)|Translation]] factor family==
These GTPases play an important role in [[initiation]], [[Eukaryotic translation#Elongation|elongation]] and termination of [[protein biosynthesis]].
 
==[[Protein translocation|Translocation]] factors==
See [[signal recognition particle]] (SRP).
 
==[[Large GTPase]]s==
See [[dynamin]] as a prototype for large GTPases.
 
==See also==
 
* [[G protein-coupled receptors]]
* [[Rho-kinase]]
 
== References ==
{{reflist}}
 
==External links==
* [http://www.mechanobio.info/Home/glossary-of-terms/mechano-glossary--p/Rho-family-of-GTPases#cdc42 MBInfo - RhoGTPases]
* {{MeshName|GTPase}}
* [http://www.genecards.org/cgi-bin/carddisp.pl?gene=NF1 Neurofibromin 1] from [[GeneCards]]
 
{{Acid anhydride hydrolases}}
 
[[Category:Signal transduction]]
[[Category:EC 3.6.5]]

Latest revision as of 00:58, 26 December 2014

A lagging computer is actually annoying plus is very a headache. Almost each individual who utilizes a computer faces this issue certain time or the other. If a computer additionally suffers within the same issue, we will find it difficult to continue functioning because routine. In such a condition, the thought, "what should I do to make my PC run quicker?" is recurring and infuriating. There's a answer, but!

Carry out window's system restore. It is important to do this because it removes incorrect changes that have happened in the system. Some of the errors result from inability of your program to create restore point frequently.

It doesn't matter whether we are not extremely obvious regarding what rundll32.exe is. But remember which it plays an significant part inside retaining the stability of the computers and the integrity of the program. When certain software or hardware can not respond normally to a system procedure, comes the rundll32 exe error, that will be caused by corrupted files or missing information in registry. Usually, error message will shows up at booting or the beginning of running a system.

The issue with many of the people is that they never like to spend cash. In the cracked adaptation one refuses to have to pay anything and will download it from internet really easily. It is simple to install because well. But, the issue comes whenever it is actually unable to identify all possible viruses, spyware and malware inside the program. This is considering it happens to be obsolete in nature and refuses to get any usual changes within the site downloaded. Thus, the program is accessible to issues like hacking.

Google Chrome crashes on Windows 7 when the registry entries are improperly modified. Missing registry keys or registry keys with wrong values can lead to runtime errors plus thereby the problem happens. You are suggested to scan the whole program registry and review the outcome. Attempt the registry repair procedure using third-party registry reviver software.

The primary reason why I might not create my PC run faster was the program registry plus it being fragmented. So software to defragment or clean the registry are required. Such software are called registry cleaners. Like all alternative software, there are paid ones and free ones with their advantages and disadvantages. To choose between your two is the user's choice.

As the hub center of the computer, all of the important settings are stored the registry. Registry is structured because keys and every key relates to a program. The system reads the keys and uses the information to launch plus run programs. However, the big problem is that there are too many unwelcome settings, useless info occuping the valuable space. It makes the program run slowly and big amounts of settings become unreadable.

Another important program you'll like to receive is a registry cleaner. The registry is a big list of everything installed on your computer, plus Windows references it when it opens a program or uses a device attached to the computer. When you delete a program, its registry entry should additionally be deleted, but occasionally it's not. A registry cleaner may receive rid of these old entries thus Windows could search the registry faster. It additionally deletes or corrects any entries which viruses have corrupted.