Eigenspinor: Difference between revisions

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m Disambiguated: spatial → Three-dimensional space
 
Put in eigenspinors for general unit vector, not just x, y, z. Make x, y forms consistent with this general form.
 
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In computational [[phylogenetics]], '''generalized tree alignment''' is the problem of producing a [[multiple sequence alignment]] and a [[phylogenetic tree]] on a set of sequences simultaneously, as opposed to separately.  
 
Formally, '''Generalized tree alignment''' is the following optimization problem.
 
'''Input''': A set <math>S</math> and an edit distance function <math>d</math> between sequences,
 
'''Output''': A tree <math>T</math> leaf-labeled by <math>S</math> and labeled with sequences at the internal nodes, such that <math>\Sigma_{e \in T} d(e)</math> is minimized, where <math>d(e)</math> is the edit distance between the endpoints of <math>e</math>.
 
Note that this is in contrast to [[tree alignment]], where the tree is provided as input.
 
{{DEFAULTSORT:Generalized Tree Alignment}}
[[Category:Computational phylogenetics]]
 
 
{{Bioinformatics-stub}}

Latest revision as of 21:00, 30 October 2014

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